PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G167600.6.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 395aa MW: 43405.8 Da PI: 9.6814

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G167600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	109	138	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le+ Sevir.2G167600.6.p 109 KTLRRLAQNREAARKSRLRKKAYIQQLETS 138 788************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-8	105	167	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.829	107	150	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-8	107	149	No hit	No description
SuperFamily	SSF57959	2.01E-7	109	143	No hit	No description
Pfam	PF00170	1.7E-8	109	138	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	112	127	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-29	193	266	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MFALITTLSI AWFAETLNIF PSQPMHVAEP IPAKGVSMGM VAAMMPNGNS SSPRRQEEGG 60 QRSAPPPPAP AVPLPNSAKE NRSSLTKKEA TSGGKGATSG DQERVRDPKT LRRLAQNREA 120 ARKSRLRKKA YIQQLETSRI RLSQLEQQVQ VARVQGVFLG AGEQPAGFPS APSPAAVFDM 180 EYGRWVEEHS KLMFQLRAAL NEHMADEQLQ AFVNGAMAQH EELLNLKGAM ARADVFHLLS 240 GVWASPAERC FLWLGGFRPS EVIKVMLKHV EPLSEGQILG IYNLQQSVQE REEALNHTME 300 ATQQSISDIV AAPDVAPATF IGHMSLAMNK VASMESFVLQ ADGLRQQTLH KLHHILTTRQ 360 AARCMVAIAD YFHRLRALST LWVARPRQED GPGL*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MFALITTLSI AWFAETLNIF PSQPMHVAEP IPAKGVSMGM VAAMMPNGNS SSPRRQEEGG  60
QRSAPPPPAP AVPLPNSAKE NRSSLTKKEA TSGGKGATSG DQERVRDPKT LRRLAQNREA  120
ARKSRLRKKA YIQQLETSRI RLSQLEQQVQ VARVQGVFLG AGEQPAGFPS APSPAAVFDM  180
EYGRWVEEHS KLMFQLRAAL NEHMADEQLQ AFVNGAMAQH EELLNLKGAM ARADVFHLLS  240
GVWASPAERC FLWLGGFRPS EVIKVMLKHV EPLSEGQILG IYNLQQSVQE REEALNHTME  300
ATQQSISDIV AAPDVAPATF IGHMSLAMNK VASMESFVLQ ADGLRQQTLH KLHHILTTRQ  360
AARCMVAIAD YFHRLRALST LWVARPRQED GPGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698770.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	O24160	1e-113	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	K3ZTN6	0.0	K3ZTN6_SETIT; Uncharacterized protein
STRING	Si029966m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-128	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G167600.6.p